IL_4V5A_131

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

4V5A|1|BA|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5A_131 not in the Motif Atlas

Homologous match to IL_4WF9_081

Geometric discrepancy: 0.1522

The information below is about IL_4WF9_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

4V5A|1|BA|G|2070
4V5A|1|BA|A|2071
*
4V5A|1|BA|U|2438
4V5A|1|BA|A|2439
4V5A|1|BA|C|2440
4V5A|1|BA|C|2441

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S RIBOSOMAL PROTEIN L2