IL_4V5A_153

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGC*GUCC

Length

7 nucleotides

Bulged bases

4V5A|1|BA|C|2879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5A_153 not in the Motif Atlas

Geometric match to IL_5J7L_008

Geometric discrepancy: 0.2658

The information below is about IL_5J7L_008

Detailed Annotation

Single bulged G, near cWW

Broad Annotation

Single bulged G, near cWW

Motif group

IL_43275.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

4V5A|1|BA|G|2838
4V5A|1|BA|G|2839
4V5A|1|BA|C|2840
*
4V5A|1|BA|G|2877
4V5A|1|BA|U|2878
4V5A|1|BA|C|2879
4V5A|1|BA|C|2880

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BR

50S RIBOSOMAL PROTEIN L17

Chain BT

50S RIBOSOMAL PROTEIN L19