IL_4V5A_260

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAUGAAGG*CUGGAG

Length

15 nucleotides

Bulged bases

4V5A|1|DA|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5A_260 not in the Motif Atlas

Geometric match to IL_4LFB_031

Geometric discrepancy: 0.3838

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

4V5A|1|DA|C|1208
4V5A|1|DA|G|1209
4V5A|1|DA|A|1210
4V5A|1|DA|U|1211
4V5A|1|DA|G|1212
4V5A|1|DA|A|1213
4V5A|1|DA|A|1214
4V5A|1|DA|G|1215
4V5A|1|DA|G|1216
*
4V5A|1|DA|C|1233
4V5A|1|DA|U|1234
4V5A|1|DA|G|1235
4V5A|1|DA|G|1236
4V5A|1|DA|A|1237
4V5A|1|DA|G|1238

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DU

50S RIBOSOMAL PROTEIN L20