IL_4V5A_327

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGU*AUACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5A_327 not in the Motif Atlas

Geometric match to IL_4WF9_012

Geometric discrepancy: 0.3361

The information below is about IL_4WF9_012

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_34117.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

7

Unit IDs

4V5A|1|AA|C|596
4V5A|1|AA|G|597
4V5A|1|AA|U|598
*
4V5A|1|AA|A|640
4V5A|1|AA|U|641
4V5A|1|AA|A|642
4V5A|1|AA|C|643
4V5A|1|AA|G|644

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AH

30S RIBOSOMAL PROTEIN S8

Chain AQ

30S RIBOSOMAL PROTEIN S17