IL_4V5A_335
3D structure
- PDB id
- 4V5A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GCCG*CUGGU
- Length
- 9 nucleotides
- Bulged bases
- 4V5A|1|AA|U|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5A_335 not in the Motif Atlas
- Geometric match to IL_4EYA_010
- Geometric discrepancy: 0.2692
- The information below is about IL_4EYA_010
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
4V5A|1|AA|G|1058
4V5A|1|AA|C|1059
4V5A|1|AA|C|1060
4V5A|1|AA|G|1061
*
4V5A|1|AA|C|1195
4V5A|1|AA|U|1196
4V5A|1|AA|G|1197
4V5A|1|AA|G|1198
4V5A|1|AA|U|1199
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AC
- 30S RIBOSOMAL PROTEIN S3
- Chain AE
- 30S RIBOSOMAL PROTEIN S5
- Chain AI
- 30S RIBOSOMAL PROTEIN S9
- Chain AJ
- 30S RIBOSOMAL PROTEIN S10
- Chain AN
- 30S RIBOSOMAL PROTEIN S14
- Chain AX
- MRNA
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