IL_4V5A_371

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCCG*CUGGU

Length

9 nucleotides

Bulged bases

4V5A|1|CA|U|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5A_371 not in the Motif Atlas

Geometric match to IL_4EYA_010

Geometric discrepancy: 0.2704

The information below is about IL_4EYA_010

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4V5A|1|CA|G|1058
4V5A|1|CA|C|1059
4V5A|1|CA|C|1060
4V5A|1|CA|G|1061
*
4V5A|1|CA|C|1195
4V5A|1|CA|U|1196
4V5A|1|CA|G|1197
4V5A|1|CA|G|1198
4V5A|1|CA|U|1199

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CC

30S RIBOSOMAL PROTEIN S3

Chain CE

30S RIBOSOMAL PROTEIN S5

Chain CI

30S RIBOSOMAL PROTEIN S9

Chain CJ

30S RIBOSOMAL PROTEIN S10

Chain CN

30S RIBOSOMAL PROTEIN S14

Chain CX

MRNA