IL_4V5A_375

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUCGC*GCGCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5A_375 not in the Motif Atlas

Geometric match to IL_8SP9_002

Geometric discrepancy: 0.3586

The information below is about IL_8SP9_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

4V5A|1|CA|G|1435
4V5A|1|CA|U|1436
4V5A|1|CA|C|1437
4V5A|1|CA|G|1438
4V5A|1|CA|C|1439
*
4V5A|1|CA|G|1462
4V5A|1|CA|C|1463
4V5A|1|CA|G|1464
4V5A|1|CA|C|1465
4V5A|1|CA|C|1466

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CT

30S RIBOSOMAL PROTEIN S20

Chain DT

50S RIBOSOMAL PROTEIN L19