IL_4V5A_386

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCGUAGGAUAGGU*ACCC

Length

17 nucleotides

Bulged bases

4V5A|1|DA|C|2111, 4V5A|1|DA|U|2118, 4V5A|1|DA|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5A_386 not in the Motif Atlas

Geometric match to IL_8C3A_109

Geometric discrepancy: 0.3431

The information below is about IL_8C3A_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

4V5A|1|DA|G|2110
4V5A|1|DA|C|2111
4V5A|1|DA|G|2112
4V5A|1|DA|U|2113
4V5A|1|DA|A|2114
4V5A|1|DA|G|2115
4V5A|1|DA|G|2116
4V5A|1|DA|A|2117
4V5A|1|DA|U|2118
4V5A|1|DA|A|2119
4V5A|1|DA|G|2120
4V5A|1|DA|G|2121
4V5A|1|DA|U|2122
*
4V5A|1|DA|A|2176
4V5A|1|DA|C|2177
4V5A|1|DA|C|2178
4V5A|1|DA|C|2179

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain CW

Transfer RNA; tRNA

Chain DC

50S RIBOSOMAL PROTEIN L1