IL_4V5A_394

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5A_394 not in the Motif Atlas

Homologous match to IL_6CZR_130

Geometric discrepancy: 0.2199

The information below is about IL_6CZR_130

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.3

Basepair signature

cWW-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V5A|1|AA|G|446
4V5A|1|AA|G|447
4V5A|1|AA|A|448
4V5A|1|AA|C|449
4V5A|1|AA|G|450
*
4V5A|1|AA|C|483
4V5A|1|AA|G|484
4V5A|1|AA|G|485
4V5A|1|AA|U|486
4V5A|1|AA|A|487
4V5A|1|AA|C|488

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S RIBOSOMAL PROTEIN S4

Chain AP

30S RIBOSOMAL PROTEIN S16

Chain DI

50S RIBOSOMAL PROTEIN L9