IL_4V5B_002

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GGUCCC*GAAAC

Length

11 nucleotides

Bulged bases

4V5B|1|AA|U|25

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_002 not in the Motif Atlas

Homologous match to IL_7A0S_103

Geometric discrepancy: 0.2326

The information below is about IL_7A0S_103

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18472.4

Basepair signature

cWW-tSW-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

4V5B|1|AA|G|23
4V5B|1|AA|G|24
4V5B|1|AA|U|25
4V5B|1|AA|C|26
4V5B|1|AA|C|27
4V5B|1|AA|C|28
*
4V5B|1|AA|G|56
4V5B|1|AA|A|57
4V5B|1|AA|A|58
4V5B|1|AA|A|59
4V5B|1|AA|C|60

Current chains

Chain AA

5S RIBOSOMAL RNA

Nearby chains

Chain AF

50S RIBOSOMAL PROTEIN L5

Chain AO

50S RIBOSOMAL PROTEIN L18