IL_4V5B_002
3D structure
- PDB id
- 4V5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of PDF binding helix in complex with the ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.74 Å
Loop
- Sequence
- GGUCCC*GAAAC
- Length
- 11 nucleotides
- Bulged bases
- 4V5B|1|AA|U|25
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5B_002 not in the Motif Atlas
- Homologous match to IL_7A0S_103
- Geometric discrepancy: 0.2326
- The information below is about IL_7A0S_103
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_18472.4
- Basepair signature
- cWW-tSW-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V5B|1|AA|G|23
4V5B|1|AA|G|24
4V5B|1|AA|U|25
4V5B|1|AA|C|26
4V5B|1|AA|C|27
4V5B|1|AA|C|28
*
4V5B|1|AA|G|56
4V5B|1|AA|A|57
4V5B|1|AA|A|58
4V5B|1|AA|A|59
4V5B|1|AA|C|60
Current chains
- Chain AA
- 5S RIBOSOMAL RNA
Nearby chains
- Chain AF
- 50S RIBOSOMAL PROTEIN L5
- Chain AO
- 50S RIBOSOMAL PROTEIN L18
Coloring options: