IL_4V5B_004

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CGAUGGUAG*CGAGAGUAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_004 not in the Motif Atlas

Homologous match to IL_5J7L_359

Geometric discrepancy: 0.1479

The information below is about IL_5J7L_359

Detailed Annotation

Bacterial 5S Loop E

Broad Annotation

Loop E

Motif group

IL_56455.6

Basepair signature

cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4V5B|1|AA|C|71
4V5B|1|AA|G|72
4V5B|1|AA|A|73
4V5B|1|AA|U|74
4V5B|1|AA|G|75
4V5B|1|AA|G|76
4V5B|1|AA|U|77
4V5B|1|AA|A|78
4V5B|1|AA|G|79
*
4V5B|1|AA|C|97
4V5B|1|AA|G|98
4V5B|1|AA|A|99
4V5B|1|AA|G|100
4V5B|1|AA|A|101
4V5B|1|AA|G|102
4V5B|1|AA|U|103
4V5B|1|AA|A|104
4V5B|1|AA|G|105

Current chains

Chain AA

5S RIBOSOMAL RNA

Nearby chains

Chain AB

Large subunit ribosomal RNA; LSU rRNA

Chain AM

50S RIBOSOMAL PROTEIN L16

Chain AV

50S RIBOSOMAL PROTEIN L25