IL_4V5B_030

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GCCA*UGC

Length

7 nucleotides

Bulged bases

4V5B|1|AB|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_030 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.3625

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

4V5B|1|AB|G|993
4V5B|1|AB|C|994
4V5B|1|AB|C|995
4V5B|1|AB|A|996
*
4V5B|1|AB|U|1159
4V5B|1|AB|G|1160
4V5B|1|AB|C|1161

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain AJ

50S RIBOSOMAL PROTEIN L13

Chain AQ

50S RIBOSOMAL PROTEIN L20

Chain AR

50S RIBOSOMAL PROTEIN L21

Chain AY

50S RIBOSOMAL PROTEIN L30