3D structure

PDB id
4V5B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of PDF binding helix in complex with the ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.74 Å

Loop

Sequence
GAUG*CGC
Length
7 nucleotides
Bulged bases
4V5B|1|AB|U|1033
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V5B_036 not in the Motif Atlas
Homologous match to IL_4WF9_041
Geometric discrepancy: 0.2251
The information below is about IL_4WF9_041
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_57744.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
22

Unit IDs

4V5B|1|AB|G|1031
4V5B|1|AB|A|1032
4V5B|1|AB|U|1033
4V5B|1|AB|G|1034
*
4V5B|1|AB|C|1121
4V5B|1|AB|G|1122
4V5B|1|AB|C|1123

Current chains

Chain AB
23S RIBOSOMAL RNA

Nearby chains

Chain A4
50S RIBOSOMAL PROTEIN L36
Chain AM
50S RIBOSOMAL PROTEIN L16

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1247 s