IL_4V5B_037
3D structure
- PDB id
- 4V5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of PDF binding helix in complex with the ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.74 Å
Loop
- Sequence
- GAAGG*UCGGC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5B_037 not in the Motif Atlas
- Geometric match to IL_5TBW_121
- Geometric discrepancy: 0.3575
- The information below is about IL_5TBW_121
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
4V5B|1|AB|G|1038
4V5B|1|AB|A|1039
4V5B|1|AB|A|1040
4V5B|1|AB|G|1041
4V5B|1|AB|G|1042
*
4V5B|1|AB|U|1113
4V5B|1|AB|C|1114
4V5B|1|AB|G|1115
4V5B|1|AB|G|1116
4V5B|1|AB|C|1117
Current chains
- Chain AB
- 23S RIBOSOMAL RNA
Nearby chains
- Chain A4
- 50S RIBOSOMAL PROTEIN L36
- Chain AG
- 50S RIBOSOMAL PROTEIN L6
- Chain AM
- 50S RIBOSOMAL PROTEIN L16
- Chain AV
- 50S RIBOSOMAL PROTEIN L25
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