IL_4V5B_046

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CUAAGG*UCGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_046 not in the Motif Atlas

Geometric match to IL_9AXU_113

Geometric discrepancy: 0.2685

The information below is about IL_9AXU_113

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74322.2

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

4V5B|1|AB|C|1351
4V5B|1|AB|U|1352
4V5B|1|AB|A|1353
4V5B|1|AB|A|1354
4V5B|1|AB|G|1355
4V5B|1|AB|G|1356
*
4V5B|1|AB|U|1375
4V5B|1|AB|C|1376
4V5B|1|AB|G|1377
4V5B|1|AB|A|1378
4V5B|1|AB|U|1379
4V5B|1|AB|G|1380

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain A2

50S RIBOSOMAL PROTEIN L34

Chain AC

50S RIBOSOMAL PROTEIN L2