IL_4V5B_056

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CGAG*UGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_056 not in the Motif Atlas

Homologous match to IL_5J7L_303

Geometric discrepancy: 0.1452

The information below is about IL_5J7L_303

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

4V5B|1|AB|C|1526
4V5B|1|AB|G|1527
4V5B|1|AB|A|1528
4V5B|1|AB|G|1529
*
4V5B|1|AB|U|1542
4V5B|1|AB|G|1543
4V5B|1|AB|A|1544
4V5B|1|AB|A|1545
4V5B|1|AB|G|1546

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains