IL_4V5B_058

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GAA*UCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_058 not in the Motif Atlas

Geometric match to IL_5J7L_305

Geometric discrepancy: 0.2292

The information below is about IL_5J7L_305

Detailed Annotation

Isolated tWW turn

Broad Annotation

No text annotation

Motif group

IL_67095.2

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

8

Unit IDs

4V5B|1|AB|G|1663
4V5B|1|AB|A|1664
4V5B|1|AB|A|1665
*
4V5B|1|AB|U|1995
4V5B|1|AB|C|1996
4V5B|1|AB|C|1997

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain AD

50S RIBOSOMAL PROTEIN L3

Chain AK

50S RIBOSOMAL PROTEIN L14

Chain AP

50S RIBOSOMAL PROTEIN L19