IL_4V5B_102

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

AG*CAU

Length

5 nucleotides

Bulged bases

4V5B|1|BA|A|397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_102 not in the Motif Atlas

Homologous match to IL_4LFB_002

Geometric discrepancy: 0.2313

The information below is about IL_4LFB_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

4V5B|1|BA|A|44
4V5B|1|BA|G|45
*
4V5B|1|BA|C|396
4V5B|1|BA|A|397
4V5B|1|BA|U|398

Current chains

Chain BA

16S RIBOSOMAL RNA

Nearby chains

Chain BP

30S RIBOSOMAL PROTEIN S16