IL_4V5B_135

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GAC*GUAC

Length

7 nucleotides

Bulged bases

4V5B|1|BA|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_135 not in the Motif Atlas

Geometric match to IL_3TD0_002

Geometric discrepancy: 0.3241

The information below is about IL_3TD0_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

4V5B|1|BA|G|922
4V5B|1|BA|A|923
4V5B|1|BA|C|924
*
4V5B|1|BA|G|1392
4V5B|1|BA|U|1393
4V5B|1|BA|A|1394
4V5B|1|BA|C|1395

Current chains

Chain BA

16S RIBOSOMAL RNA

Nearby chains

Chain BE

30S RIBOSOMAL PROTEIN S5