IL_4V5B_153

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_153 not in the Motif Atlas

Geometric match to IL_2A64_008

Geometric discrepancy: 0.3937

The information below is about IL_2A64_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55516.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

7

Unit IDs

4V5B|1|BA|C|1407
4V5B|1|BA|A|1408
4V5B|1|BA|C|1409
*
4V5B|1|BA|G|1491
4V5B|1|BA|A|1492
4V5B|1|BA|A|1493
4V5B|1|BA|G|1494

Current chains

Chain BA

16S RIBOSOMAL RNA

Nearby chains

Chain AB

Large subunit ribosomal RNA; LSU rRNA

Chain BL

30S RIBOSOMAL PROTEIN S12