IL_4V5B_154

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

ACCAU*GGGGU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_154 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3456

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

4V5B|1|BA|A|1410
4V5B|1|BA|C|1411
4V5B|1|BA|C|1412
4V5B|1|BA|A|1413
4V5B|1|BA|U|1414
*
4V5B|1|BA|G|1486
4V5B|1|BA|G|1487
4V5B|1|BA|G|1488
4V5B|1|BA|G|1489
4V5B|1|BA|U|1490

Current chains

Chain BA

16S RIBOSOMAL RNA

Nearby chains

Chain AB

Large subunit ribosomal RNA; LSU rRNA

Chain BL

30S RIBOSOMAL PROTEIN S12