IL_4V5B_171

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V5B|1|CB|G|801, 4V5B|1|CB|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_171 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.1557

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V5B|1|CB|G|674
4V5B|1|CB|A|675
4V5B|1|CB|A|676
4V5B|1|CB|A|677
4V5B|1|CB|C|678
*
4V5B|1|CB|G|799
4V5B|1|CB|A|800
4V5B|1|CB|G|801
4V5B|1|CB|A|802
4V5B|1|CB|U|803
4V5B|1|CB|A|804
4V5B|1|CB|G|805
4V5B|1|CB|C|806

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CE

50S RIBOSOMAL PROTEIN L4

Chain CL

50S RIBOSOMAL PROTEIN L15