IL_4V5B_182
3D structure
- PDB id
- 4V5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of PDF binding helix in complex with the ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.74 Å
Loop
- Sequence
- GCACUG*CAAAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5B_182 not in the Motif Atlas
- Geometric match to IL_4V9F_035
- Geometric discrepancy: 0.3564
- The information below is about IL_4V9F_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_06691.1
- Basepair signature
- cWW-cWS-L-R-L-R-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
4V5B|1|CB|G|864
4V5B|1|CB|C|865
4V5B|1|CB|A|866
4V5B|1|CB|C|867
4V5B|1|CB|U|868
4V5B|1|CB|G|869
*
4V5B|1|CB|C|908
4V5B|1|CB|A|909
4V5B|1|CB|A|910
4V5B|1|CB|A|911
4V5B|1|CB|C|912
Current chains
- Chain CB
- 23S RIBOSOMAL RNA
Nearby chains
- Chain CA
- 5S ribosomal RNA; 5S rRNA
- Chain CM
- 50S RIBOSOMAL PROTEIN L16
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