IL_4V5B_184

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GCCA*UGC

Length

7 nucleotides

Bulged bases

4V5B|1|CB|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_184 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.3621

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V5B|1|CB|G|993
4V5B|1|CB|C|994
4V5B|1|CB|C|995
4V5B|1|CB|A|996
*
4V5B|1|CB|U|1159
4V5B|1|CB|G|1160
4V5B|1|CB|C|1161

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CJ

50S RIBOSOMAL PROTEIN L13

Chain CQ

50S RIBOSOMAL PROTEIN L20

Chain CR

50S RIBOSOMAL PROTEIN L21

Chain CY

50S RIBOSOMAL PROTEIN L30