IL_4V5B_186

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_186 not in the Motif Atlas

Geometric match to IL_5J7L_278

Geometric discrepancy: 0.1554

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

4V5B|1|CB|U|1004
4V5B|1|CB|C|1005
4V5B|1|CB|C|1006
4V5B|1|CB|C|1007
4V5B|1|CB|A|1008
4V5B|1|CB|A|1009
4V5B|1|CB|A|1010
4V5B|1|CB|G|1011
*
4V5B|1|CB|C|1150
4V5B|1|CB|A|1151

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CJ

50S RIBOSOMAL PROTEIN L13

Chain CQ

50S RIBOSOMAL PROTEIN L20