IL_4V5B_192

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CGUU*AAGUG

Length

9 nucleotides

Bulged bases

4V5B|1|CB|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_192 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.3949

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V5B|1|CB|C|1196
4V5B|1|CB|G|1197
4V5B|1|CB|U|1198
4V5B|1|CB|U|1199
*
4V5B|1|CB|A|1246
4V5B|1|CB|A|1247
4V5B|1|CB|G|1248
4V5B|1|CB|U|1249
4V5B|1|CB|G|1250

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CE

50S RIBOSOMAL PROTEIN L4

Chain CL

50S RIBOSOMAL PROTEIN L15

Chain CQ

50S RIBOSOMAL PROTEIN L20