IL_4V5B_220

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GAAG*CC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_220 not in the Motif Atlas

Homologous match to IL_7RQB_073

Geometric discrepancy: 0.2115

The information below is about IL_7RQB_073

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_88739.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

4V5B|1|CB|G|1846
4V5B|1|CB|A|1847
4V5B|1|CB|A|1848
4V5B|1|CB|G|1849
*
4V5B|1|CB|C|1893
4V5B|1|CB|C|1894

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CC

50S RIBOSOMAL PROTEIN L2

Chain DA

Small subunit ribosomal RNA; SSU rRNA