IL_4V5B_231

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GUUG*UGC

Length

7 nucleotides

Bulged bases

4V5B|1|CB|U|2203

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_231 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.2354

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

4V5B|1|CB|G|2201
4V5B|1|CB|U|2202
4V5B|1|CB|U|2203
4V5B|1|CB|G|2204
*
4V5B|1|CB|U|2220
4V5B|1|CB|G|2221
4V5B|1|CB|C|2222

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CC

50S RIBOSOMAL PROTEIN L2

Chain CZ

50S RIBOSOMAL PROTEIN L31