IL_4V5B_247

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_247 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.247

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V5B|1|CB|G|2737
4V5B|1|CB|A|2738
4V5B|1|CB|U|2739
4V5B|1|CB|A|2740
4V5B|1|CB|A|2741
4V5B|1|CB|G|2742
*
4V5B|1|CB|C|2762
4V5B|1|CB|G|2763
4V5B|1|CB|A|2764
4V5B|1|CB|A|2765
4V5B|1|CB|A|2766
4V5B|1|CB|C|2767

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain C4

50S RIBOSOMAL PROTEIN L36

Chain CG

50S RIBOSOMAL PROTEIN L6

Chain CJ

50S RIBOSOMAL PROTEIN L13