IL_4V5B_262

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

4V5B|1|DA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_262 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1415

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

4V5B|1|DA|G|147
4V5B|1|DA|G|148
4V5B|1|DA|A|149
4V5B|1|DA|U|150
4V5B|1|DA|A|151
4V5B|1|DA|A|152
4V5B|1|DA|C|153
*
4V5B|1|DA|G|168
4V5B|1|DA|C|169
4V5B|1|DA|U|170
4V5B|1|DA|A|171
4V5B|1|DA|A|172
4V5B|1|DA|U|173
4V5B|1|DA|A|174
4V5B|1|DA|C|175

Current chains

Chain DA

16S RIBOSOMAL RNA

Nearby chains

Chain DT

30S RIBOSOMAL PROTEIN S20