IL_4V5B_282

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

UCU*AAGA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_282 not in the Motif Atlas

Geometric match to IL_8C3A_419

Geometric discrepancy: 0.3285

The information below is about IL_8C3A_419

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47767.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

4V5B|1|DA|U|657
4V5B|1|DA|C|658
4V5B|1|DA|U|659
*
4V5B|1|DA|A|746
4V5B|1|DA|A|747
4V5B|1|DA|G|748
4V5B|1|DA|A|749

Current chains

Chain DA

16S RIBOSOMAL RNA

Nearby chains

Chain DO

30S RIBOSOMAL PROTEIN S15