IL_4V5B_289

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GCAC*GUUCCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_289 not in the Motif Atlas

Geometric match to IL_6CZR_149

Geometric discrepancy: 0.3045

The information below is about IL_6CZR_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93211.1

Basepair signature

cWW-cWS-cWW-L-R-cWW-L

Number of instances in this motif group

2

Unit IDs

4V5B|1|DA|G|933
4V5B|1|DA|C|934
4V5B|1|DA|A|935
4V5B|1|DA|C|936
*
4V5B|1|DA|G|1379
4V5B|1|DA|U|1380
4V5B|1|DA|U|1381
4V5B|1|DA|C|1382
4V5B|1|DA|C|1383
4V5B|1|DA|C|1384

Current chains

Chain DA

16S RIBOSOMAL RNA

Nearby chains

Chain DG

30S RIBOSOMAL PROTEIN S7

Chain DI

30S RIBOSOMAL PROTEIN S9