IL_4V5B_299

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CAGCG*CGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_299 not in the Motif Atlas

Homologous match to IL_4LFB_066

Geometric discrepancy: 0.2919

The information below is about IL_4LFB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66997.1

Basepair signature

cWW-cWS-L-R-cWW-L

Number of instances in this motif group

3

Unit IDs

4V5B|1|DA|C|1129
4V5B|1|DA|A|1130
4V5B|1|DA|G|1131
4V5B|1|DA|C|1132
4V5B|1|DA|G|1133
*
4V5B|1|DA|C|1141
4V5B|1|DA|G|1142
4V5B|1|DA|G|1143

Current chains

Chain DA

16S RIBOSOMAL RNA

Nearby chains

Chain DI

30S RIBOSOMAL PROTEIN S9