IL_4V5B_302
3D structure
- PDB id
- 4V5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of PDF binding helix in complex with the ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.74 Å
Loop
- Sequence
- GAAG*CGGACC
- Length
- 10 nucleotides
- Bulged bases
- 4V5B|1|DA|A|1257, 4V5B|1|DA|A|1280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5B_302 not in the Motif Atlas
- Homologous match to IL_4LFB_052
- Geometric discrepancy: 0.2307
- The information below is about IL_4LFB_052
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.2
- Basepair signature
- cWW-cSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V5B|1|DA|G|1255
4V5B|1|DA|A|1256
4V5B|1|DA|A|1257
4V5B|1|DA|G|1258
*
4V5B|1|DA|C|1277
4V5B|1|DA|G|1278
4V5B|1|DA|G|1279
4V5B|1|DA|A|1280
4V5B|1|DA|C|1281
4V5B|1|DA|C|1282
Current chains
- Chain DA
- 16S RIBOSOMAL RNA
Nearby chains
- Chain DC
- 30S RIBOSOMAL PROTEIN S3
- Chain DJ
- 30S RIBOSOMAL PROTEIN S10
- Chain DN
- 30S RIBOSOMAL PROTEIN S14
Coloring options: