IL_4V5B_363

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_363 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.1194

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

4V5B|1|CB|G|1666
4V5B|1|CB|G|1667
4V5B|1|CB|A|1668
4V5B|1|CB|A|1669
4V5B|1|CB|C|1670
4V5B|1|CB|U|1671
4V5B|1|CB|A|1672
4V5B|1|CB|G|1673
4V5B|1|CB|G|1674
*
4V5B|1|CB|C|1990
4V5B|1|CB|U|1991
4V5B|1|CB|G|1992
4V5B|1|CB|U|1993
4V5B|1|CB|C|1994

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CD

50S RIBOSOMAL PROTEIN L3

Chain CK

50S RIBOSOMAL PROTEIN L14