IL_4V5B_394

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

UAG*CAAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_394 not in the Motif Atlas

Homologous match to IL_4WF9_014

Geometric discrepancy: 0.2395

The information below is about IL_4WF9_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69440.3

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

3

Unit IDs

4V5B|1|AB|U|293
4V5B|1|AB|A|294
4V5B|1|AB|G|295
*
4V5B|1|AB|C|343
4V5B|1|AB|A|344
4V5B|1|AB|A|345
4V5B|1|AB|A|346
4V5B|1|AB|A|347

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains