IL_4V5B_406

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_406 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1248

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4V5B|1|AB|U|1851
4V5B|1|AB|U|1852
4V5B|1|AB|A|1853
4V5B|1|AB|A|1854
4V5B|1|AB|U|1855
4V5B|1|AB|U|1856
4V5B|1|AB|G|1857
4V5B|1|AB|A|1858
4V5B|1|AB|U|1859
4V5B|1|AB|G|1860
*
4V5B|1|AB|U|1882
4V5B|1|AB|U|1883
4V5B|1|AB|G|1884
4V5B|1|AB|A|1885
4V5B|1|AB|U|1886
4V5B|1|AB|C|1887
4V5B|1|AB|G|1888
4V5B|1|AB|A|1889
4V5B|1|AB|A|1890
4V5B|1|AB|G|1891

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains