IL_4V5C_021
3D structure
- PDB id
- 4V5C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 4V5C|1|AA|A|532, 4V5C|1|AA|U|534, 4V5C|1|AA|A|535
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5C_021 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1442
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V5C|1|AA|G|515
4V5C|1|AA|U|516
4V5C|1|AA|G|517
4V5C|1|AA|C|518
4V5C|1|AA|C|519
4V5C|1|AA|A|520
4V5C|1|AA|G|521
*
4V5C|1|AA|C|528
4V5C|1|AA|G|529
4V5C|1|AA|G|530
4V5C|1|AA|U|531
4V5C|1|AA|A|532
4V5C|1|AA|A|533
4V5C|1|AA|U|534
4V5C|1|AA|A|535
4V5C|1|AA|C|536
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AC
- 30S RIBOSOMAL PROTEIN S3
- Chain AD
- 30S RIBOSOMAL PROTEIN S4
- Chain AL
- 30S RIBOSOMAL PROTEIN S12
- Chain AX
- MRNA
- Chain AY
- Transfer RNA; tRNA
Coloring options: