IL_4V5C_029

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

4V5C|1|AA|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5C_029 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.0658

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V5C|1|AA|G|662
4V5C|1|AA|A|663
4V5C|1|AA|G|664
4V5C|1|AA|A|665
4V5C|1|AA|G|666
*
4V5C|1|AA|U|740
4V5C|1|AA|G|741
4V5C|1|AA|G|742
4V5C|1|AA|U|743

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AF

30S RIBOSOMAL PROTEIN S6

Chain AO

30S RIBOSOMAL PROTEIN S15

Chain AR

30S RIBOSOMAL PROTEIN S18