IL_4V5C_087
3D structure
- PDB id
- 4V5C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AUAG*CUGU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5C_087 not in the Motif Atlas
- Geometric match to IL_402D_001
- Geometric discrepancy: 0.3504
- The information below is about IL_402D_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_77658.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 34
Unit IDs
4V5C|1|BA|A|870
4V5C|1|BA|U|871
4V5C|1|BA|A|872
4V5C|1|BA|G|873
*
4V5C|1|BA|C|904
4V5C|1|BA|U|905
4V5C|1|BA|G|906
4V5C|1|BA|U|907
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain AY
- Transfer RNA; tRNA
- Chain BB
- 5S ribosomal RNA; 5S rRNA
- Chain BQ
- 50S RIBOSOMAL PROTEIN L16
- Chain BZ
- 50S RIBOSOMAL PROTEIN L25
Coloring options: