IL_4V5C_199

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5C_199 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0776

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4V5C|1|CA|G|887
4V5C|1|CA|G|888
4V5C|1|CA|A|889
4V5C|1|CA|G|890
4V5C|1|CA|U|891
4V5C|1|CA|A|892
4V5C|1|CA|C|893
4V5C|1|CA|G|894
*
4V5C|1|CA|U|905
4V5C|1|CA|G|906
4V5C|1|CA|A|907
4V5C|1|CA|A|908
4V5C|1|CA|A|909
4V5C|1|CA|C|910

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CL

30S RIBOSOMAL PROTEIN S12

Chain CQ

30S RIBOSOMAL PROTEIN S17