IL_4V5D_092

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

4V5D|1|BA|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5D_092 not in the Motif Atlas

Homologous match to IL_5J7L_276

Geometric discrepancy: 0.1153

The information below is about IL_5J7L_276

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

4V5D|1|BA|C|994
4V5D|1|BA|C|995
4V5D|1|BA|A|996
*
4V5D|1|BA|U|1159
4V5D|1|BA|G|1160

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B3

50S RIBOSOMAL PROTEIN L30

Chain BN

50S RIBOSOMAL PROTEIN L13

Chain BU

50S RIBOSOMAL PROTEIN L20

Chain BV

50S RIBOSOMAL PROTEIN L21