IL_4V5E_271

3D structure

PDB id

4V5E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

4V5E|1|DA|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5E_271 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.1964

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

4V5E|1|DA|G|1059
4V5E|1|DA|U|1060
4V5E|1|DA|U|1061
4V5E|1|DA|G|1062
*
4V5E|1|DA|C|1076
4V5E|1|DA|A|1077
4V5E|1|DA|U|1078
4V5E|1|DA|C|1079

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DK

50S RIBOSOMAL PROTEIN L11

Chain DQ

50S RIBOSOMAL PROTEIN L16

Chain DZ

50S RIBOSOMAL PROTEIN L25