IL_4V5F_049

3D structure

PDB id

4V5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the ribosome with elongation factor G trapped in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5F_049 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.091

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4V5F|1|AA|C|1303
4V5F|1|AA|G|1304
4V5F|1|AA|G|1305
4V5F|1|AA|A|1306
4V5F|1|AA|U|1307
4V5F|1|AA|U|1308
*
4V5F|1|AA|A|1329
4V5F|1|AA|U|1330
4V5F|1|AA|G|1331
4V5F|1|AA|A|1332
4V5F|1|AA|A|1333
4V5F|1|AA|G|1334

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AM

30S RIBOSOMAL PROTEIN S13

Chain AU

30S RIBOSOMAL PROTEIN THX