IL_4V5F_089

3D structure

PDB id

4V5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the ribosome with elongation factor G trapped in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGGG*CCUAC

Length

9 nucleotides

Bulged bases

4V5F|1|BA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5F_089 not in the Motif Atlas

Geometric match to IL_1D4R_003

Geometric discrepancy: 0.3218

The information below is about IL_1D4R_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V5F|1|BA|G|880
4V5F|1|BA|G|881
4V5F|1|BA|G|882
4V5F|1|BA|G|883
*
4V5F|1|BA|C|893
4V5F|1|BA|C|894
4V5F|1|BA|U|895
4V5F|1|BA|A|896
4V5F|1|BA|C|897

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BZ

50S RIBOSOMAL PROTEIN L25