IL_4V5F_353

3D structure

PDB id

4V5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the ribosome with elongation factor G trapped in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGCAAU*AGCG

Length

10 nucleotides

Bulged bases

4V5F|1|BA|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5F_353 not in the Motif Atlas

Geometric match to IL_5TBW_062

Geometric discrepancy: 0.1968

The information below is about IL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51005.1

Basepair signature

cWW-L-R-tWH-cWW-L-L

Number of instances in this motif group

2

Unit IDs

4V5F|1|BA|C|1318
4V5F|1|BA|G|1319
4V5F|1|BA|C|1320
4V5F|1|BA|A|1321
4V5F|1|BA|A|1322
4V5F|1|BA|U|1323
*
4V5F|1|BA|A|1331
4V5F|1|BA|G|1332
4V5F|1|BA|C|1333
4V5F|1|BA|G|1334

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BW

50S RIBOSOMAL PROTEIN L22

Chain BX

50S RIBOSOMAL PROTEIN L23