IL_4V5G_121

3D structure

PDB id

4V5G (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 70S ribosome bound to EF-Tu and tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGGAG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5G_121 not in the Motif Atlas

Geometric match to IL_5TBW_067

Geometric discrepancy: 0.1663

The information below is about IL_5TBW_067

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

4V5G|1|BA|G|1856
4V5G|1|BA|G|1857
4V5G|1|BA|G|1858
4V5G|1|BA|A|1859
4V5G|1|BA|G|1860
*
4V5G|1|BA|C|1882
4V5G|1|BA|G|1883
4V5G|1|BA|A|1884
4V5G|1|BA|A|1885
4V5G|1|BA|C|1886

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain AW

Transfer RNA; tRNA

Chain B1

50S RIBOSOMAL PROTEIN L28

Chain BC

50S RIBOSOMAL PROTEIN L1