3D structure

PDB id
4V5G (explore in PDB, NAKB, or RNA 3D Hub)
Description
The crystal structure of the 70S ribosome bound to EF-Tu and tRNA
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
CUAG*CGAAAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V5G_228 not in the Motif Atlas
Homologous match to IL_7A0S_008
Geometric discrepancy: 0.5385
The information below is about IL_7A0S_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_15067.1
Basepair signature
cWW-L-R-L-R-L-cWW-L
Number of instances in this motif group
4

Unit IDs

4V5G|1|DA|C|292
4V5G|1|DA|U|293
4V5G|1|DA|A|294
4V5G|1|DA|G|295
*
4V5G|1|DA|C|343
4V5G|1|DA|G|344
4V5G|1|DA|A|345
4V5G|1|DA|A|346
4V5G|1|DA|A|347
4V5G|1|DA|G|348

Current chains

Chain DA
23S RIBOSOMAL RNA

Nearby chains

Chain DY
50S RIBOSOMAL PROTEIN L24

Coloring options:


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