IL_4V5G_228

3D structure

PDB id

4V5G (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 70S ribosome bound to EF-Tu and tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUAG*CGAAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5G_228 not in the Motif Atlas

Homologous match to IL_7A0S_008

Geometric discrepancy: 0.5385

The information below is about IL_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15067.1

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4V5G|1|DA|C|292
4V5G|1|DA|U|293
4V5G|1|DA|A|294
4V5G|1|DA|G|295
*
4V5G|1|DA|C|343
4V5G|1|DA|G|344
4V5G|1|DA|A|345
4V5G|1|DA|A|346
4V5G|1|DA|A|347
4V5G|1|DA|G|348

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DY

50S RIBOSOMAL PROTEIN L24