IL_4V5H_012

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

4V5H|1|AA|U|173

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5H_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1555

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

4V5H|1|AA|G|147
4V5H|1|AA|G|148
4V5H|1|AA|A|149
4V5H|1|AA|U|150
4V5H|1|AA|A|151
4V5H|1|AA|A|152
4V5H|1|AA|C|153
*
4V5H|1|AA|G|168
4V5H|1|AA|C|169
4V5H|1|AA|U|170
4V5H|1|AA|A|171
4V5H|1|AA|A|172
4V5H|1|AA|U|173
4V5H|1|AA|A|174
4V5H|1|AA|C|175

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AT

30S RIBOSOMAL PROTEIN S20