IL_4V5H_023

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5H_023 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.3985

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4V5H|1|AA|G|450
4V5H|1|AA|A|451
4V5H|1|AA|A|452
4V5H|1|AA|G|453
4V5H|1|AA|G|454
4V5H|1|AA|G|455
*
4V5H|1|AA|C|477
4V5H|1|AA|A|478
4V5H|1|AA|U|479
4V5H|1|AA|U|480
4V5H|1|AA|G|481
4V5H|1|AA|A|482
4V5H|1|AA|C|483

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AP

30S RIBOSOMAL PROTEIN S16